We’ve fielded several questions on the SQLCipher mailing list recently about how to convert a standard SQLite database to an encrypted SQLCipher database. This is a pretty common requirement for applications with existing databases that need to be converted to use SQLCipher full database encryption.
Attached Database (Recommended)
SQLCipher 1.1.1 added support for attaching an encrypted database to an unencrypted database to copy data between them. For instance, assume you have an standard unencrypted SQLite database called unencrypted.db with a single table, t1(a,b). To create an encrypted copy you could open up the databases and run the following:
ATTACH DATABASE 'encrypted.db' AS encrypted KEY 'secret'; -- create a new encrypted database
CREATE TABLE encrypted.t1(a,b); -- recreate the schema in the new database (you can inspect all objects using SELECT * FROM sqlite_master)
INSERT INTO encrypted.t1 SELECT * FROM t1; -- copy data from the existing tables to the new tables in the encrypted database
DETACH DATABASE encrypted;
It is fairly trivial to get a list of all schema objects from the sqlite_master table you would just repeat the CREATE TABLE / INSERT cycle once for each table. Then you can delete the unencrypted database and re-open the encrypted version with the sqlite3_key or PRAGMA key. This approach requires more work that just calling rekey, but it is be much more stable across versions.
In the mean time, we are working on finding a way to improve the built in rekey functionality in future versions. Keep an eye out here, or join the SQLCipher mailing list to keep up to date on the latest development.